Claudio Antonio Meneses Araya - Facultad de Agronomía y Sistemas Naturales

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Epigenetic control of maturity date in Prunus persica by integrating transcriptomic and epigenomic approaches. Investigador principal. ANID-FONDECYT (Abstract).
Núcleo Milenio para el Desarrollo de Plantas Super Adaptables MN-SAP. Investigador principal. ANID-Iniciativa Milenio.
Strengthening of a Smart Breeding Platform to accelerate the selection of new plant species adapted to water restriction scenario in Chile. Investigador principal. ANID.
Plataforma de Genotipificación Masiva y Escalable: Acelerando la Investigación y aplicaciones biotecnológicas en genómica para Chile. EQM220062. Investigador principal. ANID-FONDEQUIP mediano.
Instituto Milenio Centro de Regulación del Genoma (CRG). Investigador asociado. ANID-Iniciativa Milenio.
Study of cytokinin applications in early stages of berry development on changes in cell wall metabolism and its effect on the grape firmness in Vitis vinifera. Coinvestigador. ANID-FONDECYT
Skin color de-synchronization with softening of Hass avocado: dissecting the problem by integration of omics and targeted hormone analysis at harvest and during postharvest storage. Coinvestigador. ANID-FONDECYT
Identification and characterization of genetic determinants associated with rachis architecture in table grape, as the start-point to design an assisted selection breeding scheme for bunch compactness. Coinvestigador. ANID-FONDECYT
How the management of rhizosphere microbiota can enhance plant production under drought stress: developing a scientific basis for the design of next-generation biofertilizers. Coinvestigador. ANID-FONDECYT
Effect of N fertilization amount and form (NH4+ or NO3-) on Ca nutrition of blueberry (Vaccinium corymbosum L.) in Andisol soils of Southern Chile. Coinvestigador. ANID-FONDECYT

(2025) - Cistanthe longiscapa exhibits ecophysiological and molecular adaptations to the arid environments of the Atacama Desert. DOI: 10.1093/plphys/kiaf068. Ver publicación
(2024) - Fruit sugar hub: gene regulatory network associated with soluble solids content (SSC) in Prunus persica. DOI: 10.1186/s40659-024-00539-5. Ver publicación
(2024) - A First Omics Data Integration Approach in Hass Avocados to Evaluate Rootstock–Scion Interactions: From Aerial and Root Plant Growth to Fruit Development. DOI: 10.3390/plants13050603. Ver publicación
(2024) - A novel pectin methylesterase inhibitor, PMEI3, in common bean suggests a key role of pectin methylesterification in Pseudomonas resistance. DOI: 10.1093/jxb/erad362. Ver publicación
(2023) - NAC072 Interacts with HB12, HAT9, and MYBR1 in a Temporal Regulatory Network Controlling Peach Fruit Development . DOI: 10.1007/s00344-023-11153-2 . Ver publicación
(2023) - Proteomic and Low-Polar Metabolite Profiling Reveal Unique Dynamics in Fatty Acid Metabolism during Flower and Berry Development of Table Grapes. DOI: 10.3390/ijms242015360. Ver publicación
(2023) - Author Correction: Ontogenetically distinct neutrophils differ in function and transcriptional profile in zebrafish. DOI: 10.1038/s41467-023-41038-7. Ver publicación
(2023) - Ontogenetically distinct neutrophils differ in function and transcriptional profile in zebrafish. Ver publicación
(2023) - Ontogenetically distinct neutrophils differ in function and transcriptional profile in zebrafish . DOI: 10.1038/s41467-023-40662-7 . Ver publicación
(2023) - Proteomic and metabolomic integration reveals the effects of pre-flowering cytokinin applications on central carbon metabolism in table grape berries. DOI: 10.1016/j.foodchem.2023.135498 . Ver publicación
(2023) - A multiomics integrative analysis of color de-synchronization with softening of ‘Hass’ avocado fruit: A first insight into a complex physiological disorder. DOI: 10.1016/j.foodchem.2022.135215. Ver publicación
(2023) - Drosophila DAxud1 Has a Repressive Transcription Activity on Hsp70 and Other Heat Shock Genes. DOI: 10.3390/ijms24087485. Ver publicación
(2023) - A First Insight into the Microbial and Viral Communities of Comau Fjord—A Unique Human-Impacted Ecosystem in Patagonia (42° S). DOI: 10.3390/microorganisms11040904 . Ver publicación
(2023) - Metabolite Profiling Reveals the Effect of Cold Storage on Primary Metabolism in Nectarine Varieties with Contrasting Mealiness. DOI: 10.3390/plants12040766 . Ver publicación
(2023) - Cell wall disassembly, metabolome and transcriptome analysis in sweet cherry fruit with induced surface pitting. DOI: 10.1016/j.postharvbio.2023.112262 . Ver publicación
(2023) - Identification of grapevine clones via high-throughput amplicon sequencing: a proof-of-concept study. DOI: doi.org/10.1093/g3journal/jkad145
(2022) - Transcriptome and Gene Regulatory Network Analyses Reveal New Transcription Factors in Mature Fruit Associated with Harvest Date in Prunus persica. DOI: 10.3390/plants11243473. Ver publicación
(2022) - ). Global Methylation Analysis Using MSAP Reveals Differences in Chilling-Associated DNA Methylation Changes during Dormancy Release in Contrasting Sweet Cherry Varieties. Ver publicación
(2022) - Metabolomic and biochemical analysis of mesocarp tissues from table grape berries with contrasting firmness reveals cell wall modifications associated to harvest and cold storage. Ver publicación
(2022) - Color desynchronization with softening of ‘Hass’ avocado: Targeted pigment, hormone and gene expression analysis. Ver publicación
(2022) - Response Mechanisms of “Hass” Avocado to Sequential 1–methylcyclopropene Applications at Different Maturity Stages during Cold Storage. Ver publicación
(2022) - Proteomics analysis reveals new insights into surface pitting of sweet cherry cultivars displaying contrasting susceptibility. Ver publicación
(2022) - Molecular and Genomic Characterization of the Pseudomonas syringae Phylogroup 4: An Emerging Pathogen of Arabidopsis thaliana and Nicotiana benthamiana. Ver publicación
(2022) - Apoplastic class III peroxidases PRX62 and PRX69 promote Arabidopsis root hair growth at low temperature. Ver publicación
(2022) - Transcriptome analysis of Echinococcus granulosus sensu stricto protoscoleces reveals differences in immune modulation gene expression between cysts found in cattle and sheep. Ver publicación
(2022) - Draft Genome Sequence of Pseudomonas syringae RAYR-BL, a Strain Isolated from Natural Accessions of Arabidopsis thaliana Plants. Ver publicación
(2021) - Transcriptome and hormone analyses reveals differences in physiological age of ′Hass′ avocado fruit. Ver publicación
(2021) - Pre-Anthesis Cytokinin Applications Increase Table Grape Berry Firmness by Modulating Cell Wall Polysaccharides. DOI: 10.3390/plants10122642. Ver publicación
(2021) - Modeling the softening behavior of Chilean ‘Hass’ avocado to commercially segregate different batches destined for local and distant markets. Ver publicación
(2021) - Unravelling the Molecular Regulation Mechanisms of Slow Ripening Trait in Prunus persica. DOI: 10.3390/plants10112380. Ver publicación
(2021) - De novo Assembly and Analysis of Tissue-Specific Transcriptomes of the Edible Red Sea Urchin Loxechinus albus Using RNA-Seq. DOI: 10.3390/biology10100995. Ver publicación
(2021) - RNA-Seq-Based Analysis of Cortisol-Induced Differential Gene Expression Associated with Piscirickettsia salmonis Infection in Rainbow Trout (Oncorhynchus mykiss) Myotubes. Ver publicación
(2021) - Identification of DNA Methylation and Transcriptomic Profiles Associated With Fruit Mealiness in Prunus persica (L.) Batsch. Ver publicación
(2021) - De novo transcriptome sequencing in kiwifruit (Actinidia chinensis var. deliciosa (a chev) liang et ferguson) and development of tissue-specific transcriptomic resources. Ver publicación
(2021) - Main molecular pathways associated with copper tolerance response in imperata cylindrica by de novo transcriptome assembly. Ver publicación
(2021) - SARS-CoV-2 infection in asymptomatic healthcare workers at a clinic in Chile. Ver publicación
(2021) - Transcriptome analysis and postharvest behavior of the kiwifruit ‘Actinidia deliciosa’ reveal the role of ethylene-related phytohormones during fruit ripening. Ver publicación
(2021) - Phosphate-Arsenic Interactions in Halophilic Microorganisms of the Microbial Mat from Laguna Tebenquiche: from the Microenvironment to the Genomes. Ver publicación
(2020) - Can metabolites at harvest be used as physiological markers for modelling the softening behaviour of Chilean “Hass” avocados destined to local and distant markets?. Ver publicación
(2020) - Rapid sequence modification in the highly polymorphic region (HPR) of the hemagglutinin gene of the infectious salmon anaemia virus (ISAV) suggests intra‐segmental template switching recombination. DOI: 10.1111/jfd.13242. Ver publicación
(2020) - Identification of SNPs and InDels associated with berry size in table grapes integrating genetic and transcriptomic approaches. Ver publicación
(2020) - Sequences of Endophytic Fungal and Bacterial Communities from Araucaria araucana [(Molina) K. Koch, 1869] in the Coastal and Andes Mountain Ranges, Chile . Ver publicación
(2020) - Dormant but Active: Chilling Accumulation Modulates the Epigenome and Transcriptome of Prunus avium During Bud Dormancy. Ver publicación
(2020) - Origin, genomic diversity and microevolution of the Clostridium difficile B1/NAP1/RT027/ST01 strain in Costa Rica, Chile, Honduras and Mexico. DOI: 10.1099/mgen.0.000355. Ver publicación
(2020) - Identification of metabolite and lipid profiles in a segregating peach population associated with mealiness in prunus persica (L.) batsch . Ver publicación
(2020) - Identification and Evaluation of Long Noncoding RNAs in Response to Handling Stress in Red Cusk-Eel (Genypterus chilensis) via RNA-seq. DOI: 10.1007/s10126-019-09934-6. Ver publicación
(2020) - Transcriptomic study of pedicels from GA3-treated table grape genotypes with different susceptibility to berry drop reveals responses elicited in cell wall yield, primary growth and phenylpropanoids synthesis. Ver publicación
(2020) - Contrasting grapevines grafted into naturalized rootstock suggest scion-driven transcriptomic changes in response to water deficit. DOI: 10.1016/j.scienta.2019.109031. Ver publicación
(2020) - Transcriptomic study of pedicels from GA<inf>3</inf>-treated table grape genotypes with different susceptibility to berry drop reveals responses elicited in cell wall yield, primary growth and phenylpropanoids synthesis. DOI: 10.1186/s12870-020-2260-6. Ver publicación
(2019) - Evaluating the genetic structure of wild and commercial red cusk-eel (Genypterus chilensis) populations through the development of novel microsatellite markers from a reference transcriptome. DOI: 10.1007/s11033-019-05021-0. Ver publicación
(2019) - De novo assembly of Persea americana cv. ‘Hass’ transcriptome during fruit development. DOI: 10.1186/s12864-019-5486-7. Ver publicación
(2019) - A Prunus persica genome-wide RNA-seq approach uncovers major differences in the transcriptome among chilling injury sensitive and non-sensitive varieties. DOI: 10.1111/ppl.12831. Ver publicación
(2019) - A draft genome of Prunus avium 'Karina' as a tool for genomic studies. DOI: 10.17660/ActaHortic.2019.1235.11. Ver publicación
(2019) - A first insight into the structure and function of rhizosphere microbiota in Antarctic plants using shotgun metagenomic. DOI: 10.1007/s00300-019-02556-7. Ver publicación
(2019) - Early transcriptomic responses associated with the membrane-initiated action of cortisol in the skeletal muscle of rainbow trout (Oncorhynchus mykiss). DOI: 10.1152/physiolgenomics.00042.2019. Ver publicación
(2019) - Expression QTL (eQTLs) Analyses Reveal Candidate Genes Associated With Fruit Flesh Softening Rate in Peach [Prunus persica (L.) Batsch]. DOI: 10.3389/fpls.2019.01581. Ver publicación
(2019) - High-density genetic map and QTL analysis of soluble solid content, maturity date, and mealiness in peach using genotyping by sequencing. DOI: 10.1016/j.scienta.2019.108734. Ver publicación
(2019) - In-depth genomic and phenotypic characterization of the antarctic psychrotolerant strain pseudomonas sp. MPC6 reveals unique metabolic features, plasticity, and biotechnological potential. DOI: 10.3389/fmicb.2019.01154. Ver publicación
(2019) - Integration of proteomics and metabolomics data of early and middle season Hass avocados under heat treatment. DOI: 10.1016/j.foodchem.2019.03.090. Ver publicación
(2019) - New steps in mucilage biosynthesis revealed by analysis of the transcriptome of the UDP-rhamnose/UDP-galactose transporter 2 mutant. DOI: 10.1093/jxb/erz262. Ver publicación
(2019) - Orchid Mycorrhizal Interactions on the Pacific Side of the Andes from Chile. A Review. DOI: 10.1007/s42729-019-00026-x. Ver publicación
(2019) - Primary metabolism in avocado fruit. DOI: 10.3389/fpls.2019.00795. Ver publicación
(2019) - Single-base resolution of the methylome in sweet cherry (Prunus avium L.) during dormancy. DOI: 10.17660/ActaHortic.2019.1235.55. Ver publicación
(2019) - The Transcription Factor ArcA Modulates Salmonella’s Metabolism in Response to Neutrophil Hypochlorous Acid-Mediated Stress. DOI: 10.3389/fmicb.2019.02754. Ver publicación
(2019) - The endophytic fungus Chaetomium cupreum regulates expression of genes involved in the tolerance to metals and plant growth promotion in Eucalyptus globulus roots. DOI: 10.3390/microorganisms7110490. Ver publicación
(2019) - Transcriptome Profiles of Contrasting Potato (Solanum tuberosum L.) Genotypes under Water Stress. DOI: 10.3390/agronomy9120848. Ver publicación
(2019) - Variability in Genomic and Virulent Properties of Porphyromonas gingivalis Strains Isolated From Healthy and Severe Chronic Periodontitis Individuals. DOI: 10.3389/fcimb.2019.00246. Ver publicación
(2018) - WRKY7, -11 and -17 transcription factors are modulators of the bZIP28 branch of the unfolded protein response during PAMP-triggered immunity in Arabidopsis thaliana. DOI: 10.1016/j.plantsci.2018.09.019. Ver publicación
(2018) - A catechol oxidase AcPPO from cherimoya (Annona cherimola Mill.) is localized to the Golgi apparatus. DOI: 10.1016/j.plantsci.2017.10.012. Ver publicación
(2018) - Cell wall and metabolite composition of berries of Vitis vinifera (L.) cv. Thompson Seedless with different firmness. DOI: 10.1016/j.foodchem.2018.06.065. Ver publicación
(2018) - Copper-induced increased expression of genes involved in photosynthesis, carotenoid synthesis and C assimilation in the marine alga Ulva compressa. DOI: 10.1186/s12864-018-5226-4. Ver publicación
(2018) - Draft whole genome sequence analyses on Pseudomonas syringae pv. actinidiae hypersensitive response negative strains detected from kiwifruit bleeding sap samples. DOI: 10.1094/PHYTO-08-17-0278-R. Ver publicación
(2018) - Exploratory quantitative trait locus analysis for fruit-related traits in kiwifruit (Actinidia chinensis Planch.). DOI: 10.17660/ActaHortic.2018.1218.12. Ver publicación
(2018) - Genome sequence of two members of the chloroaromatic-degrading MT community: Pseudomonas reinekei MT1 and Achromobacter xylosoxidans MT3. DOI: 10.1016/j.jbiotec.2018.03.019. Ver publicación
(2018) - Identification of a novel long noncoding RNA that promotes osteoblast differentiation. DOI: 10.1002/jcb.27113. Ver publicación
(2018) - RNA-seq analysis of compensatory growth in the skeletal muscle of fine flounder (Paralichthys adspersus). DOI: 10.1016/j.aquaculture.2018.02.048. Ver publicación
(2018) - The transcription factor SlyA from Salmonella Typhimurium regulates genes in response to hydrogen peroxide and sodium hypochlorite. DOI: 10.1016/j.resmic.2018.04.003. Ver publicación
(2018) - Transcriptome analysis during ripening of table grape berry cv. Thompson Seedless. DOI: 10.1371/journal.pone.0190087. Ver publicación
(2018) - bZIP17 regulates the expression of genes related to seed storage and germination, reducing seed susceptibility to osmotic stress. DOI: 10.1002/jcb.26882. Ver publicación
(2017) - RNA-seq analysis of the head-kidney transcriptome response to handling-stress in the red cusk-eel (Genypterus chilensis).. DOI: 10.1016/j.cbd.2017.09.002. Ver publicación
(2017) - Development of a molecular marker for self-compatible S4′ haplotype in sweet cherry (Prunus avium L.) using high-resolution melting. DOI: 10.1111/pbr.12546. Ver publicación
(2017) - New insights into the heterogeneous ripening in Hass avocado via LC–MS/MS proteomics. DOI: 10.1016/j.postharvbio.2017.06.001. Ver publicación
(2017) - Transcriptomic analysis of the hepatic response to stress in the red cusk-eel (Genypterus chilensis): Insights into lipid metabolism, oxidative stress and liver steatosis.. DOI: 10.1371/journal.pone.0176447. Ver publicación
(2016) - Genome Sequence of Clostridium paraputrificum 373-A1 Isolated in Chile from a Patient Infected with Clostridium difficile.. DOI: 10.1128/genomea.01178-16. Ver publicación
(2016) - Copper-induced overexpression of genes encoding antioxidant system enzymes and metallothioneins involve the activation of CaMs, CDPKs and MEK1/2 in the marine alga Ulva compressa.. DOI: 10.1016/j.aquatox.2016.06.017. Ver publicación
(2016) - A codominant diagnostic marker for the slow ripening trait in peach. DOI: 10.1007/s11032-016-0506-7. Ver publicación
(2016) - Reference gene selection for quantitative real-time PCR in Solanum lycopersicum L. inoculated with the mycorrhizal fungus Rhizophagus irregularis. DOI: 10.1016/j.plaphy.2016.01.022. Ver publicación
(2015) - A RAD-based linkage map of kiwifruit (Actinidia chinensis Pl.) and map position of genetic determinants of traits of interest to breeders. DOI: 10.17660/ActaHortic.2015.1096.20. Ver publicación
(2015) - A RAD-based linkage map of kiwifruit (Actinidia chinensis Pl.) as a tool to improve the genome assembly and to scan the genomic region of the gender determinant for the marker-assisted breeding. DOI: 10.1007/s11295-015-0941-3. Ver publicación
(2015) - Comparative study of two table grape varieties with contrasting texture during cold storage. DOI: 10.3390/molecules20033667. Ver publicación
(2015) - Draft genome sequence of the phenol-degrading bacterium Pseudomonas putida H. DOI: 10.1128/genomeA.00936-15. Ver publicación
(2015) - Floral scent evaluation of segregating lines of Alstroemeria caryophyllaea. DOI: 10.1016/j.scienta.2015.01.014. Ver publicación
(2015) - Identification of candidate genes associated with mealiness and maturity date in peach [Prunus persica (L.) Batsch] using QTL analysis and deep sequencing. DOI: 10.1007/s11295-015-0911-9. Ver publicación
(2015) - Transcriptomic analysis of fruit stored under cold conditions using controlled atmosphere in Prunus persica cv. “Red Pearl”. DOI: 10.3389/fpls.2015.00788. Ver publicación
(2015) - mRNA-seq reveals skeletal muscle atrophy in response to handling stress in a marine teleost, the red cusk-eel (Genypterus chilensis). DOI: 10.1186/s12864-015-2232-7. Ver publicación
(2014) - Biochemical and physiological study of the firmness of table grape berries. DOI: 10.1016/j.postharvbio.2014.02.001. Ver publicación
(2013) - Using genomics to improve fruit quality. DOI: 10.4067/S0716-97602013000400006. Ver publicación
(2011) - Non-destructive monitoring of flesh softening in the black-skinned Japanese plums 'Angeleno' and 'Autumn beaut' on-tree and postharvest. DOI: 10.1016/j.postharvbio.2011.01.003. Ver publicación
(2011) - Phenolics contents and sensory characterisation of melting and non-melting peach. DOI: 10.1080/14620316.2011.11512758. Ver publicación
(2011) - Ripe nectarines segregated through sensory quality evaluation and electronic nose assessment. DOI: 10.1051/fruits/2011020. Ver publicación
(2009) - Identification of S-alleles associated with self-incompatibility in apricots (Prunus armeniaca L.) using molecular markers. Ver publicación
(2009) - Preconditioning treatment maintains taste characteristic perception of ripe 'September Sun' peach following cold storage. DOI: 10.1111/j.1365-2621.2008.01864.x. Ver publicación
(2009) - Quantitative determination of flesh mealiness in peach [Prunus persica L. (Batch.)] through paper absorption of free juice. DOI: 10.1016/j.postharvbio.2008.06.006. Ver publicación
(2008) - Effect of harvest maturity stage on the sensory quality of 'Palsteyn' apricot (Prunus armeniaca L.) after cold storage. DOI: 10.1080/14620316.2008.11512468. Ver publicación
(2008) - Genetic relationships in apricot (Prunus armeniaca L.) using SSR markers and their implications for breeding. Ver publicación
(2008) - Monitoring the sensorial quality and aroma through an electronic nose in peaches during cold storage. DOI: 10.1002/jsfa.3316. Ver publicación
(2008) - Sensory quality performance of two nectarine flesh typologies exposed to distant market conditions. DOI: 10.1111/j.1745-4557.2008.00217.x. Ver publicación
(2006) - Genetic diversity of wild species and cultivated varieties of alstroemeria estimated through morphological descriptors and RAPD markers. DOI: 10.1016/j.scienta.2006.01.009. Ver publicación
(2006) - Preliminary study on edible film with a natural plant extract to improve quality of fresh fruits for supply chains. DOI: 10.17660/ActaHortic.2006.712.75. Ver publicación
(2006) - Present situation of peach breeding programs: Post harvest and fruit quality assessment. DOI: 10.17660/ActaHortic.2006.713.14. Ver publicación
(2006) - Sensorial post-harvest quality evolution in apricot (Prunus armeniaca L.) cultivars 'Palsteyn' and 'Grandir'. Ver publicación